paper-context-resolver
lllllllama/rigorpilot-skillsFinds a missing paper detail like data split or eval protocol from primary sources for reproduction.
Most installed first. Copy the install command into a terminal; Claude Code loads the skill when a task needs it.
Finds a missing paper detail like data split or eval protocol from primary sources for reproduction.
Scans a repo and README, classifies documented commands, and returns a minimal reproduction plan.
Searches BGPT papers by topic or DOI and returns claim-level evidence from full text for literature reviews.
Guides academic paper writing across planning, drafting, revision, citation checks and format conversion.
Simulates a multi-reviewer peer review of a manuscript and drafts an editorial decision and revision roadmap.
Orchestrates the full academic workflow: research, writing, integrity checks, peer review and revision.
Runs multi-agent academic research: question framing, literature search, source checks and a cited report.
Screens review records against fixed criteria with dual reviewers, adjudication and PRISMA flow counts.
Searches literature across sources, verifies citations, and builds MeSH search strategies.
Finds and verifies Nature-family and CNS literature that supports manuscript claims, with reference export.
Drafts or audits manuscript data and code availability statements, repository plans and FAIR metadata.
Create, revise, audit and export submission-ready manuscript figures in Python or R.
Search, score, read, deliver and archive research papers daily via cron and messaging apps.
Build an evidence-grounded deep-reading card for one paper, covering methods, claims and limitations.
Translate selected pages of an English paper PDF into a Chinese image PDF that keeps the layout.
Reconstruct how the authors reached a paper's design, with worked examples and evidence limits.
Create or revise a Chinese academic PPTX from a paper, with source figures and speaker notes.
Builds source-grounded Chinese-English paper readers with aligned text, figures, tables, and equations.
Checks each reference against Crossref and other sources, flagging wrong authors, pages, and DOIs.
Drafts, audits, or revises point-by-point responses to peer review and revision cover letters.
Writes a simulated journal peer review covering significance, validity, and major and minor concerns.
Drafts, revises, or audits research proposals from evidence through a staged argument-first pipeline.
Solves olympiad math problems and checks proofs with a fresh-context adversarial verifier, admitting uncertainty.
Works a hard math problem in rounds with a judge, parallel workers and a ledger, ending in proof.md.
Solves a hard math problem in one session, saving each settled step to notes and ending with proof.md.
Plans ablation studies for a paper once main results pass, with reviewer-style design and feasibility checks.
Quickly summarizes one arXiv paper from AlphaXiv overviews, falling back to full text or LaTeX source.
Searches arXiv, downloads paper PDFs, and saves them to a local paper library folder.
Runs review, fix and recompile rounds to iteratively polish a generated paper draft.
Loops research review, fixes and re-review until a reviewer approves the work or max rounds are reached.
Loops research review and revision rounds using any OpenAI-compatible LLM API as the external reviewer.
Loops research review and revision rounds with MiniMax as the external reviewer instead of Codex.
Checks each bibliography entry is real, correctly attributed, and cited in a context the source supports.
Cross-checks bib entries field by field against web records and gives a verdict per reference.
Reviews communications and networking literature, checking local knowledge bases before web search.
Searches open-access papers via DeepXiv and reads them progressively, section by section.
Turns a research proposal into a claim-driven experiment roadmap with ablations, baselines and run order.
Runs a bounded, source-cited web research loop and drafts a dossier that needs review before any vault merge.
Guides rewriting of ML and CV paper sections for clarity, paragraph flow, figures and reviewer-facing claims.
Runs multi-agent deep research with cross-checked sources, multi-angle comparison and a written report.
Searches papers, extracts metadata from DOI, PMID or arXiv IDs, and generates and validates BibTeX entries.
Runs systematic literature reviews over PubMed, arXiv and other databases, with verified citations.
Searches ten scholarly databases via REST APIs for papers, DOIs, abstracts, and open-access full text.
Guides test selection, assumption checks, power analysis and APA-style reporting for research statistics.
Plans and builds one multi-panel publication figure from a claim and data, with review rounds.
Applies data, label, color and layout rules to publication-grade scientific figures and checks the render.
Reviews a paper's full figure deck against its manuscript and sets an ordered figure arc.
Makes the agent write papers around their strongest result, leading with the favorable narrative.
Makes the agent write papers around their strongest result, leading with the favorable narrative.
Runs a broad multi-source research task through the Octopus orchestrator and synthesizes findings.
Adds confirmed field definitions to an existing research outline in fields.yaml.
Adds confirmed research objects to an existing outline.yaml, skipping duplicates.
Runs one background research agent per outline item in parallel and saves each result as structured JSON.
Turns saved research JSON into a markdown report with a summary table of contents and detailed sections.
Guides a math modeling contest project through analysis, modeling, coding, figures and paper drafting.
Searches OpenAlex and AnySearch in parallel and merges papers into traceable metadata records.
Analyzes contest problems, designs candidate models and writes an analysis report and glossary.
Profiles data, picks chart types and makes journal-ready scientific figures in Python or MATLAB.
Implements modeling solutions in Python or MATLAB, runs them, and saves result tables and figures.
Checks numeric claims in a manuscript against analysis outputs and reports pass or fail for each claim.
Captures lockfiles, package versions and random seeds for R, Stata or Python projects so analyses can be reproduced.
Runs a specification grid over analyst choices and reports the spread of estimates instead of a single point.
Guides drafting a philosophy or interdisciplinary paper chapter by chapter from a detailed outline.
Guides planning a philosophy or interdisciplinary paper, from venue choice and literature gaps to an outline.
Turns an academic paper into a long HTML article with code lookup, formulas and Mermaid diagrams.
Guides the structure and content of academic presentations such as talks, defenses and grant briefings.
Drafts and revises academic prose against a rubric, checking evidence, citations and AI-sounding style.
Creates publication-quality ML paper figures: architecture diagrams via Gemini, data charts via matplotlib.
Guides structured frameworks for finding promising research directions and sharpening half-formed ideas.
Applies eight cognitive-science creativity frameworks to generate novel CS and AI research directions.
Searches arXiv and Semantic Scholar, finds research gaps and proposes testable hypotheses for a topic.
Turns a chosen hypothesis into an experiment blueprint with datasets, baselines, metrics and ablations.
Drafts a LaTeX paper from earlier ideation, plan and experiment outputs, including figures and bibliography.
Traces family history from archival records in the former USSR and Russian Empire, citing each source.
Writes a structured, evidence-based Markdown reading note for one paper into an Obsidian vault.
Builds reviewed Obsidian glossary notes from a paper's source manifest, with optional article links.
Edits, reviews and hardens CS-conference papers in LaTeX or Markdown, with author sign-off on changes.
Runs multi-source research with citation tracking and writes a structured, sourced report.
Checks that required math modeling evidence exists and is current, and flags missing or stale items.
Writes the final method explanation for a subquestion from recorded decisions, code, and results.
Run a filtered CNKI advanced search by author, title, journal, date and source category like SCI or CSSCI.
Download a CNKI paper PDF or CAJ file in the user's own logged-in account, when their access allows it.
Export CNKI citations to Zotero, a RIS file, or GB/T 7714 text from a paper page or search results.
Check a journal's CNKI indexing status (e.g. PKU core, CSSCI, CSCD) and read its impact and evaluation data.
Search CNKI for journals by name, ISSN, CN number or sponsor and list the matching publications.
Browse a journal's issue table of contents on CNKI and optionally download the original cover and TOC PDF.
Page through CNKI search results or change their sort order by date, citations, downloads or relevance.
Extract full metadata from a CNKI paper page: title, authors, affiliations, abstract, keywords and fund.
Turn the open CNKI search results page into structured records with title, authors, journal, date and citations.
Search CNKI for papers by keyword and return the result count and a structured list of titles and metadata.
Routes academic requests to paper review, BibTeX fabrication checks, or LLM citation benchmarks.
Reviews research papers for correctness, novelty and quality, and verifies their BibTeX references.
Scans agent cache folders and chosen directories for experiment logs, then formats them as paper inputs.
Revises a LaTeX paper draft over several rounds of simulated peer review, reverting any change that does not help.
Finds and verifies citations via Semantic Scholar, Crossref and OpenAlex, then drafts the intro and related work.
Turns raw idea, experiment log, template and guidelines into a JSON outline for a paper.
Runs four PaperOrchestra autoraters for citation F1, review quality, and side-by-side paper comparisons.
Drafts an ML/AI review paper in IEEEtran LaTeX and checks or repairs BibTeX citations against verified sources.
Helps humanities scholars sharpen questions, plan and review arguments, and answer reviewers in their own voice.
Guides ablation study design with one-variable changes, experiment matrices and baseline structure.
Guides a research project from idea to research question, literature, methods, writing and publication.
Guides math modeling contest paper writing for CUMCM and MCM/ICM, from structure to format checks.
Guides math modeling contest work: problem analysis, model choice, algorithm cookbooks and code templates.
Records a learner's concept confusions during tutoring into a progress file for pre-exam review.
Coaches exam cram sessions chapter by chapter from the student's own files, with page citations, quizzes and plans.
Runs structured last-minute exam review from student materials, with wiki chapters, quizzes, mistake logs and plans.
Makes the agent optimize a medical AI paper's title, abstract, summary and repo metadata for AI search discovery.
Makes the agent build write-paper and find-journal profiles for a new journal from its author guidelines.
Charts an author's PubMed study types, author positions and patterns, then writes a strategy report.
Helps a researcher sharpen a research question or hypothesis until it is important, testable, and defensible.
Runs source-backed research on industry or technology topics and delivers a reviewed, complete long-form report.
Runs a 10-stage, state-tracked workflow to write and review math modeling contest papers.
Turns a vague research idea into a testable brief with literature positioning and novelty checks.
Audits a paper for image misuse, numerical anomalies and logical gaps, producing a graded evidence report.
Writes a full literature survey on a topic: PDF, LaTeX source, figures, and a classified citation table.
Keeps sources, ideas and outputs as Markdown so the human can make and trace evidence-based decisions.
Builds a dated report of AI papers from 28 big tech labs, sourced from arXiv with institutional attribution.
Searches academic sources including Chinese literature and exports reports, citations and search strategies.
Searches 100M+ worldwide patents in BigQuery by keyword, CPC code or publication number.
Searches European patents via EPO OPS and BigQuery for full text, legal status and families.
Guides math modeling contest work from problem framing and computation to reviewed LaTeX paper delivery.
Builds the strongest evidence-bound case to reject a paper, using only its claims ledger and audit findings.
Lists itemized, located AI writing-style impressions in a paper, kept separate from integrity verdicts.
Fact-checks content claim by claim against independent sources and scores its hype level.
Creates academic paper diagrams as compile-verified TikZ/LaTeX code or draw.io XML.
Runs multi-source web, social, news, academic and GitHub searches through a local MCP CLI, with no API keys.
Makes personalized paper digests and ranked research ideas from your papers and saved research memory.
Plans family history research: gathers known facts, sets goals and builds a prioritized source plan first.
Searches and verifies CS and ML citations, labeling each reference as verified or unverified.
Audits CS and ML experiment evidence, classifies its source, and flags protocol risks like leakage.
Estimates intracellular fluxes from 13C labeling data with mfapy simulation and constrained fitting.
Looks up or predicts AlphaGenome effects of genomic variants on regulatory tracks and splicing.
Plans and documents analytical method validation under ICH, USP and CLSI guidance, with statistics scripts.
Infers candidate gene regulatory networks from expression data with GRNBoost2 and GENIE3 via Arboreto.
Guides Astropy use for units, coordinates, FITS files, tables, time, WCS and cosmology calculations.
Organizes, validates, queries and converts BIDS neuroscience datasets, including DICOM to BIDS conversion.
Guides Biopython work on sequences, FASTA/GenBank/PDB files, phylogenetics, BLAST and NCBI Entrez queries.
Uses the BioServices Python clients for UniProt, KEGG, ChEMBL, Reactome and other bioinformatics services.
Prepares bulk RNA-seq reads and quantification output into validated gene count matrices for DESeq2.
Runs Cantera homogeneous reactor ignition-delay calculations with mechanism provenance and numerical checks.
Runs reproducible CellProfiler pipelines for nuclear segmentation, cell counts and fluorescence measurements.
Queries the CZ CELLxGENE Census for versioned single-cell and spatial transcriptomics metadata and expression.
Guides circuit design, noise-aware compilation, simulation and job runs on Google Quantum AI with Cirq.
Turns lab photos, voice notes and text into standardized Markdown experiment logs with IDs and archives.
Runs a program, tunes its parameters and iterates until an objective or timeout is reached.
Runs an autonomous AI research project with experiment loops, result synthesis, and routing to domain skills.
Guides interpreting and editing PyTorch model internals with nnsight, locally or remotely via NDIF.
Guides causal interventions on PyTorch models with pyvene, covering activation patching and causal tracing.
Guides crystal structure, phase diagram, and band structure analysis in materials science with pymatgen.
Guides multi-objective optimization with pymoo using NSGA-II, MOEA/D, Pareto fronts and constraints.
Guides open quantum system simulation with QuTiP: master equations, Lindblad dynamics, and cavity QED.
Guides MATLAB, Python and scientific computing for signal processing, statistics, simulation and plotting.
Guides building discrete-event simulations in Python with SimPy: processes, shared resources and queues.
Predict protein monomer and multimer structures with AlphaFold2 via ColabFold, scored by pLDDT and ipTM.
Co-fold proteins, nucleic acids and small-molecule ligands with Boltz-2 and read pTM, ipTM and pLDDT scores.
Predict genome-wide functional tracks from DNA sequence with Borzoi and score variants by track changes.
Predicts protein, nucleic acid and ligand complex structures with Chai-1 on a GPU.
Predicts ligand binding poses in a protein without a search box and ranks them with a confidence score.
Predicts complex structures with ESMFold2 and scores mutations or embeddings with ESMC models.
Scores, embeds and generates DNA sequences with the Evo 2 genomic language model on a GPU.
Runs Meta's ESM-2 protein model to get embeddings, score mutations and predict residue contacts.
Produces a dossier on one disease indication: patients, epidemiology, standard of care and key trials.
Runs LigandMPNN to design sequences for a backbone with bound ligands, nucleic acids or metals.
Predicts protein, nucleic acid and ligand complex structures with OpenFold3, an open AlphaFold3 reproduction.
Runs ProteinMPNN to design amino-acid sequences for a protein backbone structure.
Geolocates or dates a photo with scripted clue extraction, reverse image search and sun or skyline checks.
Queries biological databases for gene, variant, pathway, protein, and interaction evidence and ID mapping.
Answers study questions on Ni Haisha's TCM course material using bundled references, for education only.
Guides MATLAB Aerospace Toolbox calls for atmosphere, gravity, wind, magnetic field, geoid and Earth orientation.
Guides MATLAB Aerospace Toolbox unit, time, coordinate frame and rotation conversions, including DCM and quaternions.
Writes and simulates Opentrons Python protocols for OT-2 and Flex liquid-handling robots and modules.
Guides cell type annotation for single-cell RNA-seq using marker genes, automated tools and references.
Guides the agent to collect user posts, reviews and issues, and extract observed behavior from them.
Applies Daphne Koller's approach to biology ML: fit-for-purpose data, causal reasoning and cross-team collaboration.
Chains the AI4S skills to take a topic from exploration through literature and experiments to a paper.
Builds a complete experiment package: design doc, runnable code, results with provenance, figures and report.
Queries scientific figure references, collects human picks, and exports them to guide plotting code.
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